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[jalview.git]
/
src
/
jalview
/
util
/
Comparison.java
diff --git
a/src/jalview/util/Comparison.java
b/src/jalview/util/Comparison.java
index
c779bb1
..
9a86696
100755
(executable)
--- a/
src/jalview/util/Comparison.java
+++ b/
src/jalview/util/Comparison.java
@@
-138,7
+138,7
@@
public class Comparison
\r
if (i < s1.getSequence().length())
\r
{
\r
\r
if (i < s1.getSequence().length())
\r
{
\r
- chr1 = s1.getSequence().charAt(i);
\r
+ chr1 = Character.toUpperCase(s1.getSequence().charAt(i));
\r
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
@@
-147,7
+147,7
@@
public class Comparison
\r
if (i < s2.getSequence().length())
\r
{
\r
\r
if (i < s2.getSequence().length())
\r
{
\r
- chr2 = s2.getSequence().charAt(i);
\r
+ chr2 = Character.toUpperCase(s2.getSequence().charAt(i));
\r
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
@@
-200,7
+200,7
@@
public class Comparison
\r
if (i < s1.getSequence().length())
\r
{
\r
\r
if (i < s1.getSequence().length())
\r
{
\r
- chr1 = s1.getSequence().charAt(i);
\r
+ chr1 = Character.toUpperCase(s1.getSequence().charAt(i));
\r
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
@@
-209,7
+209,7
@@
public class Comparison
\r
if (i < s2.getSequence().length())
\r
{
\r
\r
if (i < s2.getSequence().length())
\r
{
\r
- chr2 = s2.getSequence().charAt(i);
\r
+ chr2 = Character.toUpperCase(s2.getSequence().charAt(i));
\r
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
@@
-238,6
+238,6
@@
public class Comparison
*/
\r
public static boolean isGap(char c)
\r
{
\r
*/
\r
public static boolean isGap(char c)
\r
{
\r
- return ((c != '.') && (c != '-') && (c != ' ')) ? false : true;
\r
+ return ( c=='-' || c=='.' || c==' ' ) ? true : false;
\r
}
\r
}
\r
}
\r
}
\r