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JAL-1645 source formatting and organise imports
[jalview.git]
/
src
/
jalview
/
util
/
DBRefUtils.java
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
123a4e1
..
518c310
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-118,8
+118,7
@@
public class DBRefUtils
{
return false;
}
{
return false;
}
- String coordsys = dasCoordinateSystemsLookup.get(string
- .toLowerCase());
+ String coordsys = dasCoordinateSystemsLookup.get(string.toLowerCase());
return coordsys == null ? false : coordsys.equals(dBRefEntry
.getSource());
}
return coordsys == null ? false : coordsys.equals(dBRefEntry
.getSource());
}
@@
-139,8
+138,7
@@
public class DBRefUtils
{
return null;
}
{
return null;
}
- String canonical = canonicalSourceNameLookup.get(source
- .toLowerCase());
+ String canonical = canonicalSourceNameLookup.get(source.toLowerCase());
return canonical == null ? source : canonical;
}
return canonical == null ? source : canonical;
}
@@
-436,7
+434,7
@@
public class DBRefUtils
{
String pdbid = r.stringMatched(1);
String chaincode = r.stringMatched(2);
{
String pdbid = r.stringMatched(1);
String chaincode = r.stringMatched(2);
- if (chaincode==null)
+ if (chaincode == null)
{
chaincode = " ";
}
{
chaincode = " ";
}
@@
-455,8
+453,10
@@
public class DBRefUtils
pdbr.setChainCode(chaincode);
// pdbr.getProperty().put("CHAIN", chaincode);
seq.addPDBId(pdbr);
pdbr.setChainCode(chaincode);
// pdbr.getProperty().put("CHAIN", chaincode);
seq.addPDBId(pdbr);
- } else {
- System.err.println("Malformed PDB DR line:"+acn);
+ }
+ else
+ {
+ System.err.println("Malformed PDB DR line:" + acn);
}
}
else
}
}
else