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JAL-3691 toUpperCase(Locale.ROOT) for all standard file format operations
[jalview.git]
/
src
/
jalview
/
util
/
MappingUtils.java
diff --git
a/src/jalview/util/MappingUtils.java
b/src/jalview/util/MappingUtils.java
index
f5dd883
..
b552c21
100644
(file)
--- a/
src/jalview/util/MappingUtils.java
+++ b/
src/jalview/util/MappingUtils.java
@@
-542,9
+542,11
@@
public final class MappingUtils
toSequences, fromGapChar);
}
toSequences, fromGapChar);
}
- for (int[] hidden : hiddencols.getHiddenColumnsCopy())
+ Iterator<int[]> regions = hiddencols.iterator();
+ while (regions.hasNext())
{
{
- mapHiddenColumns(hidden, codonFrames, newHidden, fromSequences,
+ mapHiddenColumns(regions.next(), codonFrames, newHidden,
+ fromSequences,
toSequences, fromGapChar);
}
return; // mappedColumns;
toSequences, fromGapChar);
}
return; // mappedColumns;