* Cache a copy of the target sequences so we can mimic successive edits on
* them. This lets us compute mappings for all edits in the set.
*/
* Cache a copy of the target sequences so we can mimic successive edits on
* them. This lets us compute mappings for all edits in the set.
*/
boolean undo, AlignmentI mapTo, List<AlignedCodonFrame> mappings)
{
SequenceI[] sortOrder = command.getSequenceOrder(undo);
boolean undo, AlignmentI mapTo, List<AlignedCodonFrame> mappings)
{
SequenceI[] sortOrder = command.getSequenceOrder(undo);
{
mapHiddenColumns(hidden, codonFrames, newHidden, fromSequences,
toSequences, fromGapChar);
{
mapHiddenColumns(hidden, codonFrames, newHidden, fromSequences,
toSequences, fromGapChar);
public static List<char[]> findCodonsFor(SequenceI seq, int col,
List<AlignedCodonFrame> mappings)
{
public static List<char[]> findCodonsFor(SequenceI seq, int col,
List<AlignedCodonFrame> mappings)
{
SequenceI sequence, List<AlignedCodonFrame> mappings,
List<SequenceI> filterList)
{
SequenceI sequence, List<AlignedCodonFrame> mappings,
List<SequenceI> filterList)
{