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Merge branch 'develop' into bug/JAL-2323disulfideOverview
[jalview.git]
/
src
/
jalview
/
viewmodel
/
AlignmentViewport.java
diff --git
a/src/jalview/viewmodel/AlignmentViewport.java
b/src/jalview/viewmodel/AlignmentViewport.java
index
57258ef
..
438eaf8
100644
(file)
--- a/
src/jalview/viewmodel/AlignmentViewport.java
+++ b/
src/jalview/viewmodel/AlignmentViewport.java
@@
-36,7
+36,7
@@
import jalview.datamodel.Annotation;
import jalview.datamodel.CigarArray;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenSequences;
import jalview.datamodel.CigarArray;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenSequences;
-import jalview.datamodel.ProfileI;
+import jalview.datamodel.ProfilesI;
import jalview.datamodel.SearchResults;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SearchResults;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceCollectionI;
@@
-701,7
+701,7
@@
public abstract class AlignmentViewport implements AlignViewportI,
/**
* results of alignment consensus analysis for visible portion of view
*/
/**
* results of alignment consensus analysis for visible portion of view
*/
- protected ProfileI[] hconsensus = null;
+ protected ProfilesI hconsensus = null;
/**
* results of cDNA complement consensus visible portion of view
/**
* results of cDNA complement consensus visible portion of view
@@
-735,7
+735,7
@@
public abstract class AlignmentViewport implements AlignViewportI,
}
@Override
}
@Override
- public void setSequenceConsensusHash(ProfileI[] hconsensus)
+ public void setSequenceConsensusHash(ProfilesI hconsensus)
{
this.hconsensus = hconsensus;
}
{
this.hconsensus = hconsensus;
}
@@
-747,7
+747,7
@@
public abstract class AlignmentViewport implements AlignViewportI,
}
@Override
}
@Override
- public ProfileI[] getSequenceConsensusHash()
+ public ProfilesI getSequenceConsensusHash()
{
return hconsensus;
}
{
return hconsensus;
}