+ /* if (alignment.getHiddenSequences().getSize() > 0)
+ {
+ if (selectionGroup == null)
+ {
+ selectionGroup = new SequenceGroup();
+ selectionGroup.setEndRes(alignment.getWidth() - 1);
+ }
+ List<SequenceI> tmp = alignment.getHiddenSequences().showAll(
+ hiddenRepSequences);
+ for (SequenceI seq : tmp)
+ {
+ selectionGroup.addSequence(seq, false);
+ setSequenceAnnotationsVisible(seq, true);
+ }