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JAL-2727 null more fields in AlignmentViewport.dispose(); pull up
[jalview.git]
/
src
/
jalview
/
viewmodel
/
AlignmentViewport.java
diff --git
a/src/jalview/viewmodel/AlignmentViewport.java
b/src/jalview/viewmodel/AlignmentViewport.java
index
a8afe9a
..
8e949a5
100644
(file)
--- a/
src/jalview/viewmodel/AlignmentViewport.java
+++ b/
src/jalview/viewmodel/AlignmentViewport.java
@@
-22,6
+22,7
@@
package jalview.viewmodel;
import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
import jalview.analysis.Conservation;
import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
import jalview.analysis.Conservation;
+import jalview.analysis.TreeModel;
import jalview.api.AlignCalcManagerI;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.api.AlignCalcManagerI;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
@@
-955,6
+956,8
@@
public abstract class AlignmentViewport
residueShading = null; // may hold a reference to Consensus
changeSupport = null;
ranges = null;
residueShading = null; // may hold a reference to Consensus
changeSupport = null;
ranges = null;
+ currentTree = null;
+ selectionGroup = null;
setAlignment(null);
}
setAlignment(null);
}
@@
-2879,6
+2882,8
@@
public abstract class AlignmentViewport
*/
private SearchResultsI searchResults = null;
*/
private SearchResultsI searchResults = null;
+ protected TreeModel currentTree = null;
+
@Override
public boolean hasSearchResults()
{
@Override
public boolean hasSearchResults()
{
@@
-2937,4
+2942,16
@@
public abstract class AlignmentViewport
+ ((ignoreGapsInConsensusCalculation) ? " without gaps" : ""));
return sq;
}
+ ((ignoreGapsInConsensusCalculation) ? " without gaps" : ""));
return sq;
}
+
+ @Override
+ public void setCurrentTree(TreeModel tree)
+ {
+ currentTree = tree;
+ }
+
+ @Override
+ public TreeModel getCurrentTree()
+ {
+ return currentTree;
+ }
}
}