protected void setBoxPosition(int startRes, int startSeq, int vpwidth,
int vpheight)
{
resetAlignmentDims();
// boxX, boxY is the x,y location equivalent to startRes, startSeq
protected void setBoxPosition(int startRes, int startSeq, int vpwidth,
int vpheight)
{
resetAlignmentDims();
// boxX, boxY is the x,y location equivalent to startRes, startSeq