- int vpx = Math.round((float) mousex * alwidth / width);
- // int visXAsRes = hiddenCols.findColumnPosition(vpx);
-
- int vpy = Math.round((float) mousey * alheight / sequencesHeight);
- // int visYAsRes = hiddenSeqs.findIndexWithoutHiddenSeqs(vpy);
-
- System.out.println("vpx: " + vpx);
- // System.out.println("VisXAsRes: " + visXAsRes);
- System.out.println("transX: " + transX);
- // updateViewportFromTopLeft(vpx + transX, vpy + transY,
- // hiddenSeqs,
- // hiddenCols);
-
- int xAsRes = vpx + transX;
- int yAsSeq = vpy + transY;
-
- resetAlignmentDims();
-
- if (xAsRes < 0)
- {
- xAsRes = 0;
- }
-
- if (yAsSeq < 0)
- {
- yAsSeq = 0;
- }
-
- //
- // Convert x value to residue position
- //
-
- // need to determine where scrollCol should be, given x
- // to do this also need to know width of viewport, and some hidden column
- // correction
-
- // convert x to residues - this is an absolute position
- // int xAsRes = Math.round((float) x * alwidth / width);
-
- // get viewport width in residues
- int vpwidth = ranges.getViewportWidth();
-
- // get where x should be when accounting for hidden cols
- // if x is in a hidden col region, shift to left - but we still need
- // absolute position
- // so convert back after getting visible region position
- // int visXAsRes = hiddenCols.findColumnPosition(xAsRes);
- int visXAsRes = xAsRes;
-
- // check in case we went off the edge of the alignment
- int visAlignWidth = hiddenCols.findColumnPosition(alwidth - 1);
- /* if (visXAsRes + vpwidth - 1 > visAlignWidth)
- {
- // went past the end of the alignment, adjust backwards
-
- // if last position was before the end of the alignment, need to update
- if (ranges.getEndRes() < visAlignWidth)
- {
- visXAsRes = hiddenCols.findColumnPosition(hiddenCols
- .subtractVisibleColumns(vpwidth - 1, alwidth - 1));
- }
- else
- {
- visXAsRes = ranges.getStartRes();
- }
- }*/
-
- //
- // Convert y value to sequence position
- //
-
- // convert y to residues
- // int yAsSeq = Math.round((float) y * alheight / sequencesHeight);
-
- // get viewport height in sequences
- int vpheight = ranges.getViewportHeight();