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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob
[jalview.git]
/
src
/
jalview
/
viewmodel
/
PCAModel.java
diff --git
a/src/jalview/viewmodel/PCAModel.java
b/src/jalview/viewmodel/PCAModel.java
index
a501793
..
54a4925
100644
(file)
--- a/
src/jalview/viewmodel/PCAModel.java
+++ b/
src/jalview/viewmodel/PCAModel.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-20,13
+20,13
@@
*/
package jalview.viewmodel;
*/
package jalview.viewmodel;
-import java.util.Vector;
-
import jalview.analysis.PCA;
import jalview.analysis.PCA;
+import jalview.api.RotatableCanvasI;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequencePoint;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequencePoint;
-import jalview.api.RotatableCanvasI;
+
+import java.util.Vector;
public class PCAModel
{
public class PCAModel
{
@@
-47,7
+47,7
@@
public class PCAModel
AlignmentView seqstrings;
SequenceI[] seqs;
AlignmentView seqstrings;
SequenceI[] seqs;
-
+
/**
* Score matrix used to calculate PC
*/
/**
* Score matrix used to calculate PC
*/
@@
-70,7
+70,8
@@
public class PCAModel
public void run()
{
public void run()
{
- pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide, score_matrix);
+ pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide,
+ score_matrix);
pca.setJvCalcMode(jvCalcMode);
pca.run();
pca.setJvCalcMode(jvCalcMode);
pca.run();
@@
-241,5
+242,5
@@
public class PCAModel
{
this.score_matrix = score_matrix;
}
{
this.score_matrix = score_matrix;
}
-
+
}
}