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JAL-1136 sometimes there are no parameters associated with a CalcId key
[jalview.git]
/
src
/
jalview
/
viewmodel
/
PCAModel.java
diff --git
a/src/jalview/viewmodel/PCAModel.java
b/src/jalview/viewmodel/PCAModel.java
index
6002c8a
..
64f2497
100644
(file)
--- a/
src/jalview/viewmodel/PCAModel.java
+++ b/
src/jalview/viewmodel/PCAModel.java
@@
-19,7
+19,7
@@
public class PCAModel
nucleotide=nucleotide2;
}
nucleotide=nucleotide2;
}
- PCA pca;
+ private volatile PCA pca;
int top;
int top;
@@
-34,10
+34,18
@@
public class PCAModel
private Vector<SequencePoint> points;
private Vector<SequencePoint> points;
+ private boolean jvCalcMode=true;
+
+ public boolean isJvCalcMode()
+ {
+ return jvCalcMode;
+ }
+
public void run()
{
pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide);
public void run()
{
pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide);
+ pca.setJvCalcMode(jvCalcMode);
pca.run();
// Now find the component coordinates
pca.run();
// Now find the component coordinates
@@
-188,4
+196,9
@@
public class PCAModel
return pts;
}
return pts;
}
+ public void setJvCalcMode(boolean state)
+ {
+ jvCalcMode=state;
+ }
+
}
}