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JAL-2388 Unit tests and tidies
[jalview.git]
/
src
/
jalview
/
viewmodel
/
ViewportPositionProps.java
diff --git
a/src/jalview/viewmodel/ViewportPositionProps.java
b/src/jalview/viewmodel/ViewportPositionProps.java
index
69a60f5
..
d143130
100644
(file)
--- a/
src/jalview/viewmodel/ViewportPositionProps.java
+++ b/
src/jalview/viewmodel/ViewportPositionProps.java
@@
-24,7
+24,7
@@
import jalview.datamodel.AlignmentI;
/**
* Supplies and updates viewport properties relating to position such as: start
/**
* Supplies and updates viewport properties relating to position such as: start
- * and end residues and sequences, hidden column/row adjustments, etc
+ * and end residues and sequences
*/
public class ViewportPositionProps extends ViewportProperties
{
*/
public class ViewportPositionProps extends ViewportProperties
{
@@
-45,7
+45,9
@@
public class ViewportPositionProps extends ViewportProperties
/**
* Constructor
/**
* Constructor
- * @param alignment TODO
+ *
+ * @param alignment
+ * the viewport's alignment
*/
public ViewportPositionProps(AlignmentI alignment)
{
*/
public ViewportPositionProps(AlignmentI alignment)
{
@@
-79,6
+81,12
@@
public class ViewportPositionProps extends ViewportProperties
return al.getHeight() + al.getHiddenSequences().getSize();
}
return al.getHeight() + al.getHiddenSequences().getSize();
}
+ /**
+ * Set first residue visible in the viewport
+ *
+ * @param res
+ * residue position
+ */
public void setStartRes(int res)
{
if (res > al.getWidth() - 1)
public void setStartRes(int res)
{
if (res > al.getWidth() - 1)
@@
-92,6
+100,12
@@
public class ViewportPositionProps extends ViewportProperties
this.startRes = res;
}
this.startRes = res;
}
+ /**
+ * Set last residue visible in the viewport
+ *
+ * @param res
+ * residue position
+ */
public void setEndRes(int res)
{
if (res > al.getWidth())
public void setEndRes(int res)
{
if (res > al.getWidth())
@@
-105,6
+119,12
@@
public class ViewportPositionProps extends ViewportProperties
this.endRes = res;
}
this.endRes = res;
}
+ /**
+ * Set the first sequence visible in the viewport
+ *
+ * @param seq
+ * sequence position
+ */
public void setStartSeq(int seq)
{
if (seq > al.getHeight() - 1)
public void setStartSeq(int seq)
{
if (seq > al.getHeight() - 1)
@@
-118,6
+138,12
@@
public class ViewportPositionProps extends ViewportProperties
this.startSeq = seq;
}
this.startSeq = seq;
}
+ /**
+ * Set the last sequence visible in the viewport
+ *
+ * @param seq
+ * sequence position
+ */
public void setEndSeq(int seq)
{
if (seq > al.getHeight())
public void setEndSeq(int seq)
{
if (seq > al.getHeight())