-
- /**
- * Get absolute start residue of viewport
- */
- public int getAbsoluteStartRes()
- {
- int start = startRes;
-
- if (av.hasHiddenColumns())
- {
- start = av.getColumnSelection().adjustForHiddenColumns(start);
- }
- return start;
- }
-
- /**
- * Get absolute start residue of viewport
- */
- public int getAbsoluteEndRes()
- {
- int end = endRes;
-
- if (av.hasHiddenColumns())
- {
- end = av.getColumnSelection().adjustForHiddenColumns(end);
- }
- return end;
- }
-
- /**
- * Get absolute start sequence of viewport
- */
- public int getAbsoluteStartSeq()
- {
- int start = startSeq;
-
- if (av.hasHiddenRows())
- {
- start = av.getAlignment().getHiddenSequences()
- .adjustForHiddenSeqs(start);
- }
- return start;
- }
-
- /**
- * Get absolute end sequence of viewport
- */
- public int getAbsoluteEndSeq()
- {
- int end = endSeq;
-
- if (av.hasHiddenRows())
- {
- end = av.getAlignment().getHiddenSequences().adjustForHiddenSeqs(end);
- }
- return end;
- }
-