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JAL-3130 Lots of deprecation fixes. See utils/deprecation_auto_fixes.sh for commands...
[jalview.git]
/
src
/
jalview
/
viewmodel
/
ViewportRanges.java
diff --git
a/src/jalview/viewmodel/ViewportRanges.java
b/src/jalview/viewmodel/ViewportRanges.java
index
0cc8d7c
..
6f817bb
100644
(file)
--- a/
src/jalview/viewmodel/ViewportRanges.java
+++ b/
src/jalview/viewmodel/ViewportRanges.java
@@
-97,7
+97,7
@@
public class ViewportRanges extends ViewportProperties
*/
public int getVisibleAlignmentWidth()
{
*/
public int getVisibleAlignmentWidth()
{
- return al.getWidth() - al.getHiddenColumns().getSize();
+ return al.getVisibleWidth();
}
/**
}
/**
@@
-544,7
+544,8
@@
public class ViewportRanges extends ViewportProperties
* the startRes changed, else false.
*
* @param res
* the startRes changed, else false.
*
* @param res
- * residue position to scroll to
+ * residue position to scroll to NB visible position not absolute
+ * alignment position
* @return
*/
public boolean scrollToWrappedVisible(int res)
* @return
*/
public boolean scrollToWrappedVisible(int res)
@@
-592,9
+593,9
@@
public class ViewportRanges extends ViewportProperties
* Scroll so that (x,y) is visible. Fires a property change event.
*
* @param x
* Scroll so that (x,y) is visible. Fires a property change event.
*
* @param x
- * x position in alignment
+ * x position in alignment (absolute position)
* @param y
* @param y
- * y position in alignment
+ * y position in alignment (absolute position)
*/
public void scrollToVisible(int x, int y)
{
*/
public void scrollToVisible(int x, int y)
{
@@
-608,14
+609,14
@@
public class ViewportRanges extends ViewportProperties
}
HiddenColumns hidden = al.getHiddenColumns();
}
HiddenColumns hidden = al.getHiddenColumns();
- while (x < hidden.adjustForHiddenColumns(startRes))
+ while (x < hidden.visibleToAbsoluteColumn(startRes))
{
if (!scrollRight(false))
{
break;
}
}
{
if (!scrollRight(false))
{
break;
}
}
- while (x > hidden.adjustForHiddenColumns(endRes))
+ while (x > hidden.visibleToAbsoluteColumn(endRes))
{
if (!scrollRight(true))
{
{
if (!scrollRight(true))
{
@@
-637,7
+638,7
@@
public class ViewportRanges extends ViewportProperties
boolean changedLocation = false;
// convert the x,y location to visible coordinates
boolean changedLocation = false;
// convert the x,y location to visible coordinates
- int visX = al.getHiddenColumns().findColumnPosition(x);
+ int visX = al.getHiddenColumns().absoluteToVisibleColumn(x);
int visY = al.getHiddenSequences().findIndexWithoutHiddenSeqs(y);
// if (vis_x,vis_y) is already visible don't do anything
int visY = al.getHiddenSequences().findIndexWithoutHiddenSeqs(y);
// if (vis_x,vis_y) is already visible don't do anything