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JAL-3120 preserve feature colour/mincolour/maxcolour while modifying,
[jalview.git]
/
src
/
jalview
/
workers
/
ConsensusThread.java
diff --git
a/src/jalview/workers/ConsensusThread.java
b/src/jalview/workers/ConsensusThread.java
index
284f1a1
..
335529c
100644
(file)
--- a/
src/jalview/workers/ConsensusThread.java
+++ b/
src/jalview/workers/ConsensusThread.java
@@
-58,12
+58,13
@@
public class ConsensusThread extends AlignCalcWorker
}
while (!calcMan.notifyWorking(this))
{
}
while (!calcMan.notifyWorking(this))
{
- // System.err.println("Thread (Consensus"+Thread.currentThread().getName()+") Waiting around.");
+ // System.err.println("Thread
+ // (Consensus"+Thread.currentThread().getName()+") Waiting around.");
try
{
if (ap != null)
{
try
{
if (ap != null)
{
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
}
Thread.sleep(200);
} catch (Exception ex)
}
Thread.sleep(200);
} catch (Exception ex)
@@
-92,7
+93,7
@@
public class ConsensusThread extends AlignCalcWorker
if (ap != null)
{
if (ap != null)
{
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
}
} catch (OutOfMemoryError error)
{
}
} catch (OutOfMemoryError error)
{