+ // .updatingConservation = false;
+ // AlignViewport.UPDATING_CONSERVATION = false;
+
+ return;
+ }
+ try
+ {
+ cons = Conservation.calculateConservation("All", 3,
+ alignment.getSequences(), 0, alWidth - 1, false,
+ ConsPercGaps, quality != null);
+ } catch (IndexOutOfBoundsException x)
+ {
+ // probable race condition. just finish and return without any fuss.
+ calcMan.workerComplete(this);