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JAL-653 hold AlignedCodonFrame collections as list rather than set
[jalview.git]
/
src
/
jalview
/
ws
/
AWSThread.java
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
fe28d6c
..
b158448
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-32,6
+32,7
@@
import jalview.util.MessageManager;
import jalview.viewmodel.seqfeatures.FeatureRendererSettings;
import java.util.LinkedHashSet;
import jalview.viewmodel.seqfeatures.FeatureRendererSettings;
import java.util.LinkedHashSet;
+import java.util.List;
import java.util.Set;
public abstract class AWSThread extends Thread
import java.util.Set;
public abstract class AWSThread extends Thread
@@
-98,6
+99,7
@@
public abstract class AWSThread extends Thread
/**
* generic web service job/subjob poll loop
*/
/**
* generic web service job/subjob poll loop
*/
+ @Override
public void run()
{
JobStateSummary jstate = null;
public void run()
{
JobStateSummary jstate = null;
@@
-378,7
+380,7
@@
public abstract class AWSThread extends Thread
WsUrl = wsurl2;
if (alframe != null)
{
WsUrl = wsurl2;
if (alframe != null)
{
- Set<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
+ List<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
.getCodonFrames();
if (cf != null)
{
.getCodonFrames();
if (cf != null)
{