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JAL-3066 Working custom parameters for clustalo
[jalview.git]
/
src
/
jalview
/
ws
/
AWSThread.java
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
80918f9
..
36e51c5
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-116,9
+116,13
@@
public abstract class AWSThread extends Thread
{
StartJob(jobs[j]);
}
{
StartJob(jobs[j]);
}
-
+ Cache.log.debug("Job " + jobs[j] + " is " + (jobs[j].submitted ? "submitted" : "not submitted"));
if (jobs[j].submitted && !jobs[j].subjobComplete)
{
if (jobs[j].submitted && !jobs[j].subjobComplete)
{
+ jalview.bin.Cache.log.debug(
+ "Polling Job " + j + " Result state was:" + jobs[j].getState() + "(ServerError=" + jobs[j].isServerError()
+ + ")"
+ );
try
{
pollJob(jobs[j]);
try
{
pollJob(jobs[j]);
@@
-188,7
+192,7
@@
public abstract class AWSThread extends Thread
Cache.log.debug("Interrupted sleep waiting for next job poll.",
e);
}
Cache.log.debug("Interrupted sleep waiting for next job poll.",
e);
}
- // System.out.println("I'm alive "+alTitle);
+ // System.out.println("I'm alive ?");
}
}
if (jobComplete && jobs != null)
}
}
if (jobComplete && jobs != null)
@@
-383,7
+387,7
@@
public abstract class AWSThread extends Thread
.getCodonFrames();
if (cf != null)
{
.getCodonFrames();
if (cf != null)
{
- codonframe = new ArrayList<AlignedCodonFrame>();
+ codonframe = new ArrayList<>();
codonframe.addAll(cf);
}
}
codonframe.addAll(cf);
}
}