- { sequence.getStart()+absStart, sequence.getStart()+absStart+entrySeq.length()-1 }, new int[]\r
- { entry.getStart(),\r
- entry.getStart() + entrySeq.length() - 1 }, 1, 1);\r
- updateRefFrame=false; // mapping is based on current start/end so don't modify start and end\r
+ { sequence.getStart() + absStart,\r
+ sequence.getStart() + absStart + entrySeq.length() - 1 },\r
+ new int[]\r
+ { entry.getStart(),\r
+ entry.getStart() + entrySeq.length() - 1 }, 1, 1);\r
+ updateRefFrame = false; // mapping is based on current start/end so\r
+ // don't modify start and end\r