mp = new Mapping(null, new int[] { sequenceStart + absStart,
sequenceStart + absStart + entrySeq.length() - 1 }, new int[]
{ entry.getStart(), entry.getStart() + entrySeq.length() - 1 },
1, 1);
mp = new Mapping(null, new int[] { sequenceStart + absStart,
sequenceStart + absStart + entrySeq.length() - 1 }, new int[]
{ entry.getStart(), entry.getStart() + entrySeq.length() - 1 },
1, 1);