- mp = new Mapping(null, new int[] { sequenceStart + absStart,
- sequenceStart + absStart + entrySeq.length() - 1 }, new int[]
- { retrievedSeq.getStart(),
- retrievedSeq.getStart() + entrySeq.length() - 1 }, 1, 1);
+ mp = new Mapping(null,
+ new int[]
+ { sequenceStart + absStart,
+ sequenceStart + absStart + entrySeq.length() - 1 },
+ new int[]
+ { retrievedSeq.getStart(),
+ retrievedSeq.getStart() + entrySeq.length() - 1 },
+ 1, 1);