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File Parsing returns Alignments, not Sequence[]
[jalview.git]
/
src
/
jalview
/
ws
/
JPredThread.java
diff --git
a/src/jalview/ws/JPredThread.java
b/src/jalview/ws/JPredThread.java
index
0e4e396
..
0c9b8d3
100644
(file)
--- a/
src/jalview/ws/JPredThread.java
+++ b/
src/jalview/ws/JPredThread.java
@@
-93,8
+93,8
@@
implements WSClientI
al = new Alignment(sqs);
\r
alcsel=(ColumnSelection) alandcolsel[1];
\r
} else {
\r
al = new Alignment(sqs);
\r
alcsel=(ColumnSelection) alandcolsel[1];
\r
} else {
\r
- al = new Alignment(new FormatAdapter().readFile(result.getAligfile(),
\r
- "Paste", format));
\r
+ al = new FormatAdapter().readFile(result.getAligfile(),
\r
+ "Paste", format);
\r
sqs = new SequenceI[al.getHeight()];
\r
\r
for (int i = 0, j = al.getHeight(); i < j; i++)
\r
sqs = new SequenceI[al.getHeight()];
\r
\r
for (int i = 0, j = al.getHeight(); i < j; i++)
\r