sqs = (SequenceI[]) alandcolsel[0];\r
al = new Alignment(sqs);\r
alcsel = (ColumnSelection) alandcolsel[1];\r
sqs = (SequenceI[]) alandcolsel[0];\r
al = new Alignment(sqs);\r
alcsel = (ColumnSelection) alandcolsel[1];\r
SequenceI[] sqs = (SequenceI[]) ( (java.lang.Object[]) input.\r
getAlignmentAndColumnSelection(gc))[\r
0];\r
SequenceI[] sqs = (SequenceI[]) ( (java.lang.Object[]) input.\r
getAlignmentAndColumnSelection(gc))[\r
0];\r
\r
SequenceI profileseq = al.getSequenceAt(FirstSeq);\r
profileseq.setSequence(sqs[msaIndex].getSequenceAsString());\r
\r
SequenceI profileseq = al.getSequenceAt(FirstSeq);\r
profileseq.setSequence(sqs[msaIndex].getSequenceAsString());\r