Object[] res = ( (MsaWSJob) jobs[j]).getAlignment();
alorders.add(res[1]);
results[j] = (SequenceI[]) res[0];
orders[j] = (AlignmentOrder) res[1];
// SequenceI[] alignment = input.getUpdated
Object[] res = ( (MsaWSJob) jobs[j]).getAlignment();
alorders.add(res[1]);
results[j] = (SequenceI[]) res[0];
orders[j] = (AlignmentOrder) res[1];
// SequenceI[] alignment = input.getUpdated