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JAL-1705 include stop codons in derived CDS; support ensemblgenomes
[jalview.git]
/
src
/
jalview
/
ws
/
SequenceFetcher.java
diff --git
a/src/jalview/ws/SequenceFetcher.java
b/src/jalview/ws/SequenceFetcher.java
index
007c85c
..
902ce27
100644
(file)
--- a/
src/jalview/ws/SequenceFetcher.java
+++ b/
src/jalview/ws/SequenceFetcher.java
@@
-21,6
+21,7
@@
package jalview.ws;
import jalview.ext.ensembl.EnsemblGene;
package jalview.ws;
import jalview.ext.ensembl.EnsemblGene;
+import jalview.ext.ensembl.EnsemblGenomes;
import jalview.ws.dbsources.EmblCdsSource;
import jalview.ws.dbsources.EmblSource;
import jalview.ws.dbsources.Pdb;
import jalview.ws.dbsources.EmblCdsSource;
import jalview.ws.dbsources.EmblSource;
import jalview.ws.dbsources.Pdb;
@@
-58,11
+59,8
@@
public class SequenceFetcher extends ASequenceFetcher
public SequenceFetcher(boolean addDas)
{
public SequenceFetcher(boolean addDas)
{
- // addDBRefSourceImpl(EnsemblProtein.class);
- // addDBRefSourceImpl(EnsemblCds.class);
- // addDBRefSourceImpl(EnsemblGenome.class);
addDBRefSourceImpl(EnsemblGene.class);
addDBRefSourceImpl(EnsemblGene.class);
- // addDBRefSourceImpl(EnsemblCdna.class);
+ addDBRefSourceImpl(EnsemblGenomes.class);
addDBRefSourceImpl(EmblSource.class);
addDBRefSourceImpl(EmblCdsSource.class);
addDBRefSourceImpl(Uniprot.class);
addDBRefSourceImpl(EmblSource.class);
addDBRefSourceImpl(EmblCdsSource.class);
addDBRefSourceImpl(Uniprot.class);