- AverageDistanceEngine clusterer = new AverageDistanceEngine(null, null,
- this);
- double height = clusterer.findHeight(clusterer.getTopNode());
- newick = new jalview.io.NewickFile(clusterer.getTopNode(), false, true)
- .print();
- treeType = "UPGMA";
- Console.trace("Newick string\n" + newick);
-
- List<BinaryNode> nodegroups;
- if (abs ? height > thresh : 0 < thresh && thresh < 1)