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JAL-4134 store/restore Newick tree for PAE annotation row
[jalview.git]
/
src
/
jalview
/
ws
/
datamodel
/
alphafold
/
PAEContactMatrix.java
diff --git
a/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
b/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
index
87ccab6
..
a5ce9a0
100644
(file)
--- a/
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
+++ b/
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
@@
-222,17
+222,17
@@
public class PAEContactMatrix implements ContactMatrixI
@Override
public String getAnnotDescr()
{
@Override
public String getAnnotDescr()
{
- return "Predicted Alignment Error for " + refSeq.getName();
+ return "Predicted Alignment Error"+((refSeq==null) ? "" : (" for " + refSeq.getName()));
}
@Override
public String getAnnotLabel()
{
StringBuilder label = new StringBuilder("PAE Matrix");
}
@Override
public String getAnnotLabel()
{
StringBuilder label = new StringBuilder("PAE Matrix");
- if (this.getReferenceSeq() != null)
- {
- label.append(":").append(this.getReferenceSeq().getDisplayId(false));
- }
+ //if (this.getReferenceSeq() != null)
+ //{
+ // label.append(":").append(this.getReferenceSeq().getDisplayId(false));
+ //}
return label.toString();
}
return label.toString();
}
@@
-262,7
+262,8
@@
public class PAEContactMatrix implements ContactMatrixI
return groups!=null;
}
String newick=null;
return groups!=null;
}
String newick=null;
- public String getNewickString()
+ @Override
+ public String getNewick()
{
return newick;
}
{
return newick;
}