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JAL-3949 An attempt at converting to Log4j 2 -- no output achieved!
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
EBIAlfaFold.java
diff --git
a/src/jalview/ws/dbsources/EBIAlfaFold.java
b/src/jalview/ws/dbsources/EBIAlfaFold.java
index
b77fc47
..
4449b0b
100644
(file)
--- a/
src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/
src/jalview/ws/dbsources/EBIAlfaFold.java
@@
-124,6
+124,10
@@
public class EBIAlfaFold extends EbiFileRetrievedProxy
@Override
public AlignmentI getSequenceRecords(String queries) throws Exception
{
@Override
public AlignmentI getSequenceRecords(String queries) throws Exception
{
+ return getSequenceRecords(queries, null);
+ }
+ public AlignmentI getSequenceRecords(String queries, String retrievalUrl) throws Exception
+ {
AlignmentI pdbAlignment = null;
String chain = null;
String id = null;
AlignmentI pdbAlignment = null;
String chain = null;
String id = null;
@@
-145,6
+149,10
@@
public class EBIAlfaFold extends EbiFileRetrievedProxy
return null;
}
String alphaFoldCif = getAlphaFoldCifDownloadUrl(id);
return null;
}
String alphaFoldCif = getAlphaFoldCifDownloadUrl(id);
+ if (retrievalUrl != null)
+ {
+ alphaFoldCif = retrievalUrl;
+ }
try
{
try
{
@@
-327,4
+335,5
@@
public class EBIAlfaFold extends EbiFileRetrievedProxy
{
return new PDBFeatureSettings();
}
{
return new PDBFeatureSettings();
}
+
}
}