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JAL-3692 parse multiline feature qualifiers and escaped quotes
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
EmblFlatfileSource.java
diff --git
a/src/jalview/ws/dbsources/EmblFlatfileSource.java
b/src/jalview/ws/dbsources/EmblFlatfileSource.java
index
2353f22
..
6536958
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblFlatfileSource.java
+++ b/
src/jalview/ws/dbsources/EmblFlatfileSource.java
@@
-73,12
+73,12
@@
public abstract class EmblFlatfileSource extends EbiFileRetrievedProxy
try
{
reply = dbFetch.fetchDataAsFile(
try
{
reply = dbFetch.fetchDataAsFile(
- dbName.toLowerCase() + ":" + query.trim(), null, "txt");
+ dbName.toLowerCase() + ":" + query.trim(), null, "gz");
} catch (Exception e)
{
stopQuery();
throw new Exception(
} catch (Exception e)
{
stopQuery();
throw new Exception(
- String.format("EBI EMBL XML retrieval failed for %s:%s",
+ String.format("EBI EMBL retrieval failed for %s:%s",
dbName.toLowerCase(), query.trim()),
e);
}
dbName.toLowerCase(), query.trim()),
e);
}
@@
-112,4
+112,10
@@
public abstract class EmblFlatfileSource extends EbiFileRetrievedProxy
stopQuery();
return al;
}
stopQuery();
return al;
}
+
+ @Override
+ public boolean isDnaCoding()
+ {
+ return true;
+ }
}
}