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JAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and WSL parts of bash launcher script...
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
EmblXmlSource.java
diff --git
a/src/jalview/ws/dbsources/EmblXmlSource.java
b/src/jalview/ws/dbsources/EmblXmlSource.java
index
b3b99ca
..
034ea4f
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/
src/jalview/ws/dbsources/EmblXmlSource.java
@@
-43,7
+43,7
@@
import javax.xml.stream.XMLStreamReader;
import com.stevesoft.pat.Regex;
import jalview.analysis.SequenceIdMatcher;
import com.stevesoft.pat.Regex;
import jalview.analysis.SequenceIdMatcher;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.DBRefEntry;
@@
-658,7
+658,7
@@
public abstract class EmblXmlSource extends EbiFileRetrievedProxy
return listToArray(ranges);
} catch (ParseException e)
{
return listToArray(ranges);
} catch (ParseException e)
{
- Cache.warn(
+ Console.warn(
String.format("Not parsing inexact CDS location %s in ENA %s",
location, accession));
return new int[] {};
String.format("Not parsing inexact CDS location %s in ENA %s",
location, accession));
return new int[] {};