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JAL-3111 JAL-1424 release notes
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Pfam.java
diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
0227e35
..
8877c34
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-20,6
+20,7
@@
*/
package jalview.ws.dbsources;
*/
package jalview.ws.dbsources;
+import jalview.bin.Cache;
import jalview.datamodel.DBRefSource;
import com.stevesoft.pat.Regex;
import jalview.datamodel.DBRefSource;
import com.stevesoft.pat.Regex;
@@
-34,6
+35,9
@@
import com.stevesoft.pat.Regex;
*/
abstract public class Pfam extends Xfam
{
*/
abstract public class Pfam extends Xfam
{
+ static final String PFAM_BASEURL_KEY = "PFAM_BASEURL";
+
+ private static final String DEFAULT_PFAM_BASEURL = "https://pfam.xfam.org";
public Pfam()
{
public Pfam()
{
@@
-48,7
+52,6
@@
abstract public class Pfam extends Xfam
@Override
public String getAccessionSeparator()
{
@Override
public String getAccessionSeparator()
{
- // TODO Auto-generated method stub
return null;
}
return null;
}
@@
-60,7
+63,6
@@
abstract public class Pfam extends Xfam
@Override
public Regex getAccessionValidator()
{
@Override
public Regex getAccessionValidator()
{
- // TODO Auto-generated method stub
return null;
}
return null;
}
@@
-91,17
+93,14
@@
abstract public class Pfam extends Xfam
@Override
public String getDbVersion()
{
@Override
public String getDbVersion()
{
- // TODO Auto-generated method stub
return null;
}
return null;
}
- /**
- * Returns base URL for selected Pfam alignment type
- *
- * @return PFAM URL stub for this DbSource
- */
@Override
@Override
- protected abstract String getXFAMURL();
+ protected String getURLPrefix()
+ {
+ return Cache.getDefault(PFAM_BASEURL_KEY, DEFAULT_PFAM_BASEURL);
+ }
/*
* (non-Javadoc)
/*
* (non-Javadoc)