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implemented embl validation properly
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
PfamFull.java
diff --git
a/src/jalview/ws/dbsources/PfamFull.java
b/src/jalview/ws/dbsources/PfamFull.java
index
b8d1020
..
25e08fc
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamFull.java
+++ b/
src/jalview/ws/dbsources/PfamFull.java
@@
-22,7
+22,7
@@
import jalview.ws.seqfetcher.DbSourceProxy;
\r
/**
\r
* flyweight class specifying retrieval of Full family alignments from PFAM
\r
\r
/**
\r
* flyweight class specifying retrieval of Full family alignments from PFAM
\r
- *
\r
+ *
\r
*/
\r
public class PfamFull extends Pfam implements DbSourceProxy
\r
{
\r
*/
\r
public class PfamFull extends Pfam implements DbSourceProxy
\r
{
\r
@@
-31,7
+31,9
@@
public class PfamFull extends Pfam implements DbSourceProxy
super();
\r
}
\r
\r
super();
\r
}
\r
\r
- /* (non-Javadoc)
\r
+ /*
\r
+ * (non-Javadoc)
\r
+ *
\r
* @see jalview.ws.dbsources.Pfam#getPFAMURL()
\r
*/
\r
protected String getPFAMURL()
\r
* @see jalview.ws.dbsources.Pfam#getPFAMURL()
\r
*/
\r
protected String getPFAMURL()
\r
@@
-39,20
+41,24
@@
public class PfamFull extends Pfam implements DbSourceProxy
return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";
\r
}
\r
\r
return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";
\r
}
\r
\r
- /* (non-Javadoc)
\r
+ /*
\r
+ * (non-Javadoc)
\r
+ *
\r
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
\r
*/
\r
public String getDbName()
\r
{
\r
return "PFAM (Full)";
\r
}
\r
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
\r
*/
\r
public String getDbName()
\r
{
\r
return "PFAM (Full)";
\r
}
\r
+
\r
public String getDbSource()
\r
{
\r
return getDbName(); // so we have unique DbSource string.
\r
}
\r
public String getDbSource()
\r
{
\r
return getDbName(); // so we have unique DbSource string.
\r
}
\r
+
\r
public String getTestQuery()
\r
{
\r
public String getTestQuery()
\r
{
\r
- return "PF03760";
\r
+ return "PF03760";
\r
}
\r
\r
}
\r
}
\r
\r
}
\r