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JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
PfamSeed.java
diff --git
a/src/jalview/ws/dbsources/PfamSeed.java
b/src/jalview/ws/dbsources/PfamSeed.java
index
2ea75af
..
e4662e1
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamSeed.java
+++ b/
src/jalview/ws/dbsources/PfamSeed.java
@@
-20,7
+20,7
@@
*/
package jalview.ws.dbsources;
*/
package jalview.ws.dbsources;
-import jalview.ws.seqfetcher.DbSourceProxy;
+import jalview.datamodel.DBRefSource;
/**
* flyweight class specifying retrieval of Seed alignments from PFAM
/**
* flyweight class specifying retrieval of Seed alignments from PFAM
@@
-28,21
+28,17
@@
import jalview.ws.seqfetcher.DbSourceProxy;
* @author JimP
*
*/
* @author JimP
*
*/
-public class PfamSeed extends Pfam implements DbSourceProxy
+public class PfamSeed extends Pfam
{
public PfamSeed()
{
super();
}
{
public PfamSeed()
{
super();
}
- /*
- * (non-Javadoc)
- *
- * @see jalview.ws.dbsources.Pfam#getPFAMURL()
- */
- protected String getXFAMURL()
+ @Override
+ public String getURLSuffix()
{
{
- return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
+ return "/alignment/seed";
}
/*
}
/*
@@
-50,16
+46,19
@@
public class PfamSeed extends Pfam implements DbSourceProxy
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
+ @Override
public String getDbName()
{
public String getDbName()
{
- return "PFAM (Seed)";
+ return DBRefSource.PFAM_SEED;
}
}
+ @Override
public String getDbSource()
{
return jalview.datamodel.DBRefSource.PFAM; // archetype source
}
public String getDbSource()
{
return jalview.datamodel.DBRefSource.PFAM; // archetype source
}
+ @Override
public String getTestQuery()
{
return "PF03760";
public String getTestQuery()
{
return "PF03760";