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Merge branch 'bug/JAL-2934proportionalScrolling' into develop
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
RfamSeed.java
diff --git
a/src/jalview/ws/dbsources/RfamSeed.java
b/src/jalview/ws/dbsources/RfamSeed.java
index
e1993dd
..
eaa574b
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamSeed.java
+++ b/
src/jalview/ws/dbsources/RfamSeed.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-20,31
+20,23
@@
*/
package jalview.ws.dbsources;
*/
package jalview.ws.dbsources;
-import jalview.ws.seqfetcher.DbSourceProxy;
-
/**
* Flyweight class specifying retrieval of Seed family alignments from RFAM
*
* @author Lauren Michelle Lui
*
*/
/**
* Flyweight class specifying retrieval of Seed family alignments from RFAM
*
* @author Lauren Michelle Lui
*
*/
-public class RfamSeed extends Rfam implements DbSourceProxy
+public class RfamSeed extends Rfam
{
public RfamSeed()
{
super();
}
{
public RfamSeed()
{
super();
}
- /*
- * (non-Javadoc)
- *
- * @see jalview.ws.dbsources.Rfam#getRFAMURL()
- */
- protected String getXFAMURL()
+ @Override
+ public String getURLSuffix()
{
{
- return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
- // Janelia Farms url
- // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
+ return "/alignment/stockholm" + GZIPPED;
}
/*
}
/*
@@
-52,21
+44,25
@@
public class RfamSeed extends Rfam implements DbSourceProxy
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
+ @Override
public String getDbName()
{
return "RFAM (Seed)";
}
public String getDbName()
{
return "RFAM (Seed)";
}
+ @Override
public String getDbSource()
{
return getDbName(); // so we have unique DbSource string.
}
public String getDbSource()
{
return getDbName(); // so we have unique DbSource string.
}
+ @Override
public String getTestQuery()
{
return "RF00014";
} // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
public String getTestQuery()
{
return "RF00014";
} // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
+ @Override
public String getDbVersion()
{
return null;
public String getDbVersion()
{
return null;