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JAL-2210 need to add both transcript and product, and Ensembl needs to be marked...
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Uniprot.java
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
e26ccda
..
4c53ef9
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-236,7
+236,7
@@
public class Uniprot extends DbSourceProxyImpl
dbRefs.add(dbr);
}
}
dbRefs.add(dbr);
}
}
- if (false) // "Ensembl".equals(pdb.getType()))
+ if ("Ensembl".equals(pdb.getType()))
{
/*UniprotXML
* <dbReference type="Ensembl" id="ENST00000321556">
{
/*UniprotXML
* <dbReference type="Ensembl" id="ENST00000321556">
@@
-249,8
+249,6
@@
public class Uniprot extends DbSourceProxyImpl
.get("protein sequence ID");
if (cdsId != null && cdsId.trim().length() > 0)
{
.get("protein sequence ID");
if (cdsId != null && cdsId.trim().length() > 0)
{
- // Only add the product ID
- dbRefs.remove(dbr);
dbr = new DBRefEntry(DBRefSource.ENSEMBL, DBRefSource.UNIPROT
+ ":" + dbVersion, cdsId.trim());
dbRefs.add(dbr);
dbr = new DBRefEntry(DBRefSource.ENSEMBL, DBRefSource.UNIPROT
+ ":" + dbVersion, cdsId.trim());
dbRefs.add(dbr);