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JAL-2106 removed setSourceDBRef, refactor getSourceDBRef to getPrimaryDBRefs
[jalview.git]
/
src
/
jalview
/
ws
/
dbsources
/
Uniprot.java
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
8cc0ce4
..
81b4caf
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-205,10
+205,10
@@
public class Uniprot extends DbSourceProxyImpl
{
DBRefEntry dbRef = new DBRefEntry(DBRefSource.UNIPROT, dbVersion,
accessionId);
{
DBRefEntry dbRef = new DBRefEntry(DBRefSource.UNIPROT, dbVersion,
accessionId);
+
+ // mark dbRef as a primary reference for this sequence
dbRefs.add(dbRef);
}
dbRefs.add(dbRef);
}
- sequence.setSourceDBRef((dbRefs != null && dbRefs.size() > 0) ? dbRefs
- .get(0) : null);
Vector<PDBEntry> onlyPdbEntries = new Vector<PDBEntry>();
for (PDBEntry pdb : entry.getDbReference())
Vector<PDBEntry> onlyPdbEntries = new Vector<PDBEntry>();
for (PDBEntry pdb : entry.getDbReference())