- AlignmentI rcds = new FormatAdapter().readFile(getXFAMURL()
- + queries.trim().toUpperCase() + getXFAMURLSUFFIX(),
- jalview.io.FormatAdapter.URL,
- "STH");
+ String xfamUrl = getXFAMURL() + queries.trim().toUpperCase()
+ + getXFAMURLSUFFIX();
+
+ if (Cache.log != null)
+ {
+ Cache.log.debug("XFAM URL for retrieval is: " + xfamUrl);
+ }
+
+ AlignmentI rcds = new FormatAdapter().readFile(xfamUrl,
+ DataSourceType.URL, FileFormat.Stockholm);
+