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JAL-629 Change --open to --append and --opennew to --open. Make --open(new) part...
[jalview.git]
/
src
/
jalview
/
ws
/
jws1
/
JPredClient.java
diff --git
a/src/jalview/ws/jws1/JPredClient.java
b/src/jalview/ws/jws1/JPredClient.java
index
3b7bdb6
..
cc73d24
100644
(file)
--- a/
src/jalview/ws/jws1/JPredClient.java
+++ b/
src/jalview/ws/jws1/JPredClient.java
@@
-20,8
+20,10
@@
*/
package jalview.ws.jws1;
*/
package jalview.ws.jws1;
+import java.util.Locale;
+
import jalview.analysis.AlignSeq;
import jalview.analysis.AlignSeq;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SeqCigar;
import jalview.datamodel.SequenceI;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SeqCigar;
import jalview.datamodel.SequenceI;
@@
-99,7
+101,7
@@
public class JPredClient extends WS1Client
Jpred server = locateWebService();
if (server == null)
{
Jpred server = locateWebService();
if (server == null)
{
- Cache.log.warn("Couldn't find a Jpred webservice to invoke!");
+ Console.warn("Couldn't find a Jpred webservice to invoke!");
return;
}
SeqCigar[] msf = null;
return;
}
SeqCigar[] msf = null;
@@
-183,7
+185,7
@@
public class JPredClient extends WS1Client
private String getPredictionName(String webServiceName)
{
private String getPredictionName(String webServiceName)
{
- if (webServiceName.toLowerCase()
+ if (webServiceName.toLowerCase(Locale.ROOT)
.indexOf("secondary structure prediction") > -1)
{
return webServiceName;
.indexOf("secondary structure prediction") > -1)
{
return webServiceName;