amap.get("Dydx").put(THRESHOLD, new double[]
{ 1, 0 });
amap.get("Dydx").put(RANGE, new float[]
amap.get("Dydx").put(THRESHOLD, new double[]
{ 1, 0 });
amap.get("Dydx").put(RANGE, new float[]
amap.put("SmoothedScore", new HashMap<String, Object>());
amap.get("SmoothedScore").put(INVISIBLE, INVISIBLE);
amap.put("SmoothedScore", new HashMap<String, Object>());
amap.get("SmoothedScore").put(INVISIBLE, INVISIBLE);
amap.get("COILS").put(THRESHOLD, new double[]
{ 1, 0.516 });
amap.get("COILS").put(RANGE, new float[]
amap.get("COILS").put(THRESHOLD, new double[]
{ 1, 0.516 });
amap.get("COILS").put(RANGE, new float[]
amap.get("HOTLOOPS").put(THRESHOLD, new double[]
{ 1, 0.6 });
amap.get("HOTLOOPS").put(RANGE, new float[]
amap.get("HOTLOOPS").put(THRESHOLD, new double[]
{ 1, 0.6 });
amap.get("HOTLOOPS").put(RANGE, new float[]
amap.get("REM465").put(THRESHOLD, new double[]
{ 1, 0.1204 });
amap.get("REM465").put(RANGE, new float[]
amap.get("REM465").put(THRESHOLD, new double[]
{ 1, 0.1204 });
amap.get("REM465").put(RANGE, new float[]
annotMap.put(compbio.ws.client.Services.IUPredWS.toString(),
amap = new HashMap<String, Map<String, Object>>());
annotMap.put(compbio.ws.client.Services.IUPredWS.toString(),
amap = new HashMap<String, Map<String, Object>>());
amap.get("Long").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("Long").put(RANGE, new float[]
amap.get("Long").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("Long").put(RANGE, new float[]
amap.get("Short").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("Short").put(RANGE, new float[]
amap.get("Short").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("Short").put(RANGE, new float[]
annotMap.put(compbio.ws.client.Services.JronnWS.toString(),
amap = new HashMap<String, Map<String, Object>>());
amap.put("JRonn", new HashMap<String, Object>());
amap.get("JRonn").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("JRonn").put(RANGE, new float[]
annotMap.put(compbio.ws.client.Services.JronnWS.toString(),
amap = new HashMap<String, Map<String, Object>>());
amap.put("JRonn", new HashMap<String, Object>());
amap.get("JRonn").put(THRESHOLD, new double[]
{ 1, 0.5 });
amap.get("JRonn").put(RANGE, new float[]
{
boolean sameGroup = false;
SequenceI dseq, aseq, seq = seqNames.get(seqId);
{
boolean sameGroup = false;
SequenceI dseq, aseq, seq = seqNames.get(seqId);
aseq = seq;
while ((dseq = seq).getDatasetSequence() != null)
{
seq = seq.getDatasetSequence();
}
ScoreHolder scores = null;
aseq = seq;
while ((dseq = seq).getDatasetSequence() != null)
{
seq = seq.getDatasetSequence();
}
ScoreHolder scores = null;
+ "\nSee http://issues.jalview.org/browse/JAL-1319 for one possible reason why disorder predictions might fail.");
}
float last = Float.NaN, val = Float.NaN;
int lastAnnot = ourAnnot.size();
+ "\nSee http://issues.jalview.org/browse/JAL-1319 for one possible reason why disorder predictions might fail.");
}
float last = Float.NaN, val = Float.NaN;
int lastAnnot = ourAnnot.size();
service.getServiceTypeURI() + "/" + scr.getMethod(),
aseq, base + 1, scr);
annot.graph = AlignmentAnnotation.LINE_GRAPH;
service.getServiceTypeURI() + "/" + scr.getMethod(),
aseq, base + 1, scr);
annot.graph = AlignmentAnnotation.LINE_GRAPH;
- double[] thrsh = (styleMap==null) ? null
- : (double[]) styleMap.get(
- THRESHOLD);
- float[] range = (styleMap==null) ? null : (float[]) styleMap.get(
- RANGE);
- if (range!=null)
+ double[] thrsh = (styleMap == null) ? null
+ : (double[]) styleMap.get(THRESHOLD);
+ float[] range = (styleMap == null) ? null
+ : (float[]) styleMap.get(RANGE);
+ if (range != null)