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Merge branch 'JAL-1403' into develop
[jalview.git]
/
src
/
jalview
/
ws
/
jws2
/
AADisorderClient.java
diff --git
a/src/jalview/ws/jws2/AADisorderClient.java
b/src/jalview/ws/jws2/AADisorderClient.java
index
3c19dc5
..
41f0fd5
100644
(file)
--- a/
src/jalview/ws/jws2/AADisorderClient.java
+++ b/
src/jalview/ws/jws2/AADisorderClient.java
@@
-41,7
+41,7
@@
import compbio.data.sequence.Score;
import compbio.data.sequence.ScoreManager.ScoreHolder;
import compbio.metadata.Argument;
import compbio.data.sequence.ScoreManager.ScoreHolder;
import compbio.metadata.Argument;
-public class AADisorderClient extends JabawsAlignCalcWorker implements
+public class AADisorderClient extends JabawsCalcWorker implements
AlignCalcWorkerI
{
AlignCalcWorkerI
{
@@
-181,7
+181,7
@@
public class AADisorderClient extends JabawsAlignCalcWorker implements
{
boolean sameGroup = false;
SequenceI dseq, aseq, seq = seqNames.get(seqId);
{
boolean sameGroup = false;
SequenceI dseq, aseq, seq = seqNames.get(seqId);
- int base = seq.getStart() - 1;
+ int base = seq.findPosition(start)-1;
aseq = seq;
while ((dseq = seq).getDatasetSequence() != null)
{
aseq = seq;
while ((dseq = seq).getDatasetSequence() != null)
{