- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.gui.AlignFrame;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.gui.AlignFrame;
import compbio.data.sequence.FastaSequence;
import compbio.data.sequence.JpredAlignment;
import compbio.metadata.Argument;
public class JPred301Client extends JabawsMsaInterfaceAlignCalcWorker
import compbio.data.sequence.FastaSequence;
import compbio.data.sequence.JpredAlignment;
import compbio.metadata.Argument;
public class JPred301Client extends JabawsMsaInterfaceAlignCalcWorker
public String getServiceActionText()
{
return "calculating consensus secondary structure prediction using JPred service";
}
public String getServiceActionText()
{
return "calculating consensus secondary structure prediction using JPred service";
}
jpredRes_ssonly.add("jnetpred".toLowerCase());
jpredRes_ssonly.add("jnetpssm".toLowerCase());
jpredRes_ssonly.add("jnethmm".toLowerCase());
jpredRes_ssonly.add("jnetpred".toLowerCase());
jpredRes_ssonly.add("jnetpssm".toLowerCase());
jpredRes_ssonly.add("jnethmm".toLowerCase());
* update the consensus annotation from the sequence profile data using
* current visualization settings.
*/
* update the consensus annotation from the sequence profile data using
* current visualization settings.
*/
public void updateResultAnnotation(boolean immediate)
{
if (immediate || !calcMan.isWorking(this) && msascoreset != null)
public void updateResultAnnotation(boolean immediate)
{
if (immediate || !calcMan.isWorking(this) && msascoreset != null)
try
{
elm[i] = new Annotation("" + annot, "" + annot, annot,
try
{
elm[i] = new Annotation("" + annot, "" + annot, annot,