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JAL-2775 added repaint clipping
[jalview.git]
/
src
/
jalview
/
ws
/
jws2
/
JabawsMsaInterfaceAlignCalcWorker.java
diff --git
a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
index
0baa767
..
ee36d4a
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
@@
-43,8
+43,8
@@
import compbio.metadata.JobSubmissionException;
import compbio.metadata.ResultNotAvailableException;
import compbio.metadata.WrongParameterException;
import compbio.metadata.ResultNotAvailableException;
import compbio.metadata.WrongParameterException;
-public abstract class JabawsMsaInterfaceAlignCalcWorker extends
- AbstractJabaCalcWorker
+public abstract class JabawsMsaInterfaceAlignCalcWorker
+ extends AbstractJabaCalcWorker
{
@SuppressWarnings("unchecked")
{
@SuppressWarnings("unchecked")
@@
-59,7
+59,8
@@
public abstract class JabawsMsaInterfaceAlignCalcWorker extends
}
public JabawsMsaInterfaceAlignCalcWorker(Jws2Instance service,
}
public JabawsMsaInterfaceAlignCalcWorker(Jws2Instance service,
- AlignFrame alignFrame, WsParamSetI preset, List<Argument> paramset)
+ AlignFrame alignFrame, WsParamSetI preset,
+ List<Argument> paramset)
{
this(alignFrame.getCurrentView(), alignFrame.alignPanel);
this.guiProgress = alignFrame;
{
this(alignFrame.getCurrentView(), alignFrame.alignPanel);
this.guiProgress = alignFrame;
@@
-129,10
+130,8
@@
public abstract class JabawsMsaInterfaceAlignCalcWorker extends
rslt = msaservice.customAlign(seqs, getJabaArguments());
} catch (WrongParameterException x)
{
rslt = msaservice.customAlign(seqs, getJabaArguments());
} catch (WrongParameterException x)
{
- throw new JobSubmissionException(
- MessageManager
- .getString("exception.jobsubmission_invalid_params_set"),
- x);
+ throw new JobSubmissionException(MessageManager.getString(
+ "exception.jobsubmission_invalid_params_set"), x);
}
}
return rslt;
}
}
return rslt;