- List<AlignmentAnnotation> annotationFromScoreManager(
- AnnotationWsJob running, AlignViewportI alignViewport,
- boolean[] gapMap)
+ List<AlignmentAnnotation> annotationFromScoreManager(AlignmentI seqs,
+ Map<String, FeatureColourI> featureColours,
+ Map<String, FeatureMatcherSetI> featureFilters)