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JAL-2714 HMMSearch cutoff by E-Value, Score or None
[jalview.git]
/
src
/
jalview
/
ws
/
params
/
simple
/
LogarithmicParameter.java
diff --git
a/src/jalview/ws/params/simple/LogarithmicParameter.java
b/src/jalview/ws/params/simple/LogarithmicParameter.java
index
01744e7
..
af80181
100644
(file)
--- a/
src/jalview/ws/params/simple/LogarithmicParameter.java
+++ b/
src/jalview/ws/params/simple/LogarithmicParameter.java
@@
-17,8
+17,6
@@
public class LogarithmicParameter extends Option implements ParameterI
final double max;
final double max;
- final double base; // todo is this even needed?
-
@Override
public ValueConstrainI getValidValue()
{
@Override
public ValueConstrainI getValidValue()
{
@@
-51,31
+49,27
@@
public class LogarithmicParameter extends Option implements ParameterI
max = parm.max;
min = parm.min;
defval = 0D;
max = parm.max;
min = parm.min;
defval = 0D;
- base = parm.base;
}
public LogarithmicParameter(String name, String description,
}
public LogarithmicParameter(String name, String description,
- boolean required, Double defValue, double min, double max,
- double base)
+ boolean required, Double defValue, double min, double max)
{
super(name, description, required, String.valueOf(defValue), null, null,
null);
defval = defValue;
this.min = min;
this.max = max;
{
super(name, description, required, String.valueOf(defValue), null, null,
null);
defval = defValue;
this.min = min;
this.max = max;
- this.base = base;
}
public LogarithmicParameter(String name, String description,
boolean required, Double defValue, double value, double min,
}
public LogarithmicParameter(String name, String description,
boolean required, Double defValue, double value, double min,
- double max, double base)
+ double max)
{
super(name, description, required, String.valueOf(defValue),
String.valueOf(value), null, null);
defval = defValue;
this.min = min;
this.max = max;
{
super(name, description, required, String.valueOf(defValue),
String.valueOf(value), null, null);
defval = defValue;
this.min = min;
this.max = max;
- this.base = base;
}
@Override
}
@Override
@@
-83,9
+77,4
@@
public class LogarithmicParameter extends Option implements ParameterI
{
return new LogarithmicParameter(this);
}
{
return new LogarithmicParameter(this);
}
-
- public double getBase()
- {
- return base;
- }
}
}