git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge branch 'bug/JAL-2634' into develop
[jalview.git]
/
src
/
jalview
/
ws
/
rest
/
RestClient.java
diff --git
a/src/jalview/ws/rest/RestClient.java
b/src/jalview/ws/rest/RestClient.java
index
7fbae89
..
27f5271
100644
(file)
--- a/
src/jalview/ws/rest/RestClient.java
+++ b/
src/jalview/ws/rest/RestClient.java
@@
-259,7
+259,8
@@
public class RestClient extends WSClient implements WSClientI,
{
// intersect groups with selected region
_input = new AlignmentView(av.getAlignment(),
{
// intersect groups with selected region
_input = new AlignmentView(av.getAlignment(),
- av.getColumnSelection(), av.getSelectionGroup(),
+ av.getAlignment()
+ .getHiddenColumns(), av.getSelectionGroup(),
av.hasHiddenColumns(), true, true);
viewTitle = MessageManager.formatMessage(
"label.select_visible_region_of",
av.hasHiddenColumns(), true, true);
viewTitle = MessageManager.formatMessage(
"label.select_visible_region_of",
@@
-272,7
+273,8
@@
public class RestClient extends WSClient implements WSClientI,
{
// use selected region to partition alignment
_input = new AlignmentView(av.getAlignment(),
{
// use selected region to partition alignment
_input = new AlignmentView(av.getAlignment(),
- av.getColumnSelection(), av.getSelectionGroup(),
+ av.getAlignment()
+ .getHiddenColumns(), av.getSelectionGroup(),
av.hasHiddenColumns(), false, true);
}
viewTitle = MessageManager.formatMessage(
av.hasHiddenColumns(), false, true);
}
viewTitle = MessageManager.formatMessage(
@@
-286,7
+288,8
@@
public class RestClient extends WSClient implements WSClientI,
{
// just take selected region intersection
_input = new AlignmentView(av.getAlignment(),
{
// just take selected region intersection
_input = new AlignmentView(av.getAlignment(),
- av.getColumnSelection(), av.getSelectionGroup(),
+ av.getAlignment()
+ .getHiddenColumns(), av.getSelectionGroup(),
av.hasHiddenColumns(), true, true);
viewTitle = MessageManager.formatMessage(
"label.select_visible_region_of",
av.hasHiddenColumns(), true, true);
viewTitle = MessageManager.formatMessage(
"label.select_visible_region_of",
@@
-300,7
+303,8
@@
public class RestClient extends WSClient implements WSClientI,
{
// standard alignment view without selection present
_input = new AlignmentView(av.getAlignment(),
{
// standard alignment view without selection present
_input = new AlignmentView(av.getAlignment(),
- av.getColumnSelection(), null, av.hasHiddenColumns(), false,
+ av.getAlignment()
+ .getHiddenColumns(), null, av.hasHiddenColumns(), false,
true);
viewTitle = ""
+ (av.hasHiddenColumns() ? (new StringBuffer(" ")
true);
viewTitle = ""
+ (av.hasHiddenColumns() ? (new StringBuffer(" ")