- lst.add(new Option("format", "Alignment upload format", true, "FASTA",
- format, Arrays
- .asList(jalview.io.FormatAdapter.WRITEABLE_FORMATS),
+ List<String> writable = FileFormats.getInstance()
+ .getWritableFormats(true);
+ lst.add(new Option("format", "Alignment upload format", true,
+ FileFormat.Fasta.toString(), format.getName(), writable, null));
+ lst.add(createMolTypeOption("type", "Sequence type", false, type,