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JAL-2674 Changed CigarArray constructor to use HiddenColumns iterator
[jalview.git]
/
src
/
jalview
/
ws
/
rest
/
params
/
SeqVector.java
diff --git
a/src/jalview/ws/rest/params/SeqVector.java
b/src/jalview/ws/rest/params/SeqVector.java
index
d331de4
..
55ca3ff
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqVector.java
+++ b/
src/jalview/ws/rest/params/SeqVector.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-50,8
+50,7
@@
public class SeqVector extends InputType
public SeqVector()
{
public SeqVector()
{
- super(new Class[]
- { AlignmentI.class });
+ super(new Class[] { AlignmentI.class });
}
@Override
}
@Override
@@
-66,7
+65,7
@@
public class SeqVector extends InputType
{
idvector.append(sep);
}
{
idvector.append(sep);
}
- idvector.append(seq.getSequence());
+ idvector.append(seq.getSequenceAsString());
}
return new StringBody(idvector.toString());
}
}
return new StringBody(idvector.toString());
}
@@
-108,8
+107,8
@@
public class SeqVector extends InputType
return true;
} catch (Exception x)
{
return true;
} catch (Exception x)
{
- warnings.append("Invalid molecule type '" + val
- + "'. Must be one of (");
+ warnings.append(
+ "Invalid molecule type '" + val + "'. Must be one of (");
for (molType v : molType.values())
{
warnings.append(" " + v);
for (molType v : molType.values())
{
warnings.append(" " + v);