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JAL-1067, JAL-1105 - refactor parser to fit Jalview's data parsing architecture
[jalview.git]
/
src
/
jalview
/
ws
/
seqfetcher
/
DbSourceProxy.java
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxy.java
b/src/jalview/ws/seqfetcher/DbSourceProxy.java
index
ea3fc0f
..
4b9c472
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxy.java
@@
-1,6
+1,6
@@
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
\r
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
\r
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
\r
*
\r
* This file is part of Jalview.
\r
*
\r
*
\r
* This file is part of Jalview.
\r
*
\r
@@
-31,7
+31,7
@@
import com.stevesoft.pat.Regex;
* database (unify with io)
\r
*
\r
* @author JimP
\r
* database (unify with io)
\r
*
\r
* @author JimP
\r
- *
\r
+ * TODO: promote to API
\r
*/
\r
public interface DbSourceProxy
\r
{
\r
*/
\r
public interface DbSourceProxy
\r
{
\r
@@
-100,11
+100,10
@@
public interface DbSourceProxy
/**
\r
* make one or more queries to the database and attempt to parse the response
\r
* into an alignment
\r
/**
\r
* make one or more queries to the database and attempt to parse the response
\r
* into an alignment
\r
- *
\r
- * @param queries
\r
+ * @param queries - one or more queries for database in expected form
\r
* @return null if queries were successful but result was not parsable
\r
* @return null if queries were successful but result was not parsable
\r
- * @throws Exception
\r
- * TODO
\r
+ * @throws Exception - propagated from underlying transport to database (note - exceptions are not raised if query not found in database)
\r
+ *
\r
*/
\r
public AlignmentI getSequenceRecords(String queries) throws Exception;
\r
\r
*/
\r
public AlignmentI getSequenceRecords(String queries) throws Exception;
\r
\r