+ // Sometimes SIFTS mappings are wrongly swapped between different chains of
+ // a PDB entry. This results to wrong mappings being generated. The boolean
+ // flag 'isGetEntityIdDirectly, determines whether an entity to process is
+ // determined by a greedy heuristic search or by just matching the Chain Id
+ // directly against the entity Id tag. Setting the default value to 'false'
+ // utilise the heuristic search which always produces correct mappings but
+ // less optimised processing, where as changing the value to 'true'
+ // optimises performance but might result to incorrect mapping in some cases
+ // where SIFTS mappings are wrongly swapped between different chains.
+ boolean isGetEntityIdDirectly = false;
+ if (isGetEntityIdDirectly)