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JAL-1919 code improvement to make PDB sequence fetcher file format configurable....
[jalview.git]
/
src
/
jalview
/
ws
/
sifts
/
SiftsClient.java
diff --git
a/src/jalview/ws/sifts/SiftsClient.java
b/src/jalview/ws/sifts/SiftsClient.java
index
d30482f
..
ef6df43
100644
(file)
--- a/
src/jalview/ws/sifts/SiftsClient.java
+++ b/
src/jalview/ws/sifts/SiftsClient.java
@@
-26,6
+26,7
@@
import jalview.api.SiftsClientI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.DBRefSource;
import jalview.datamodel.SequenceI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.DBRefSource;
import jalview.datamodel.SequenceI;
+import jalview.io.StructureFile;
import jalview.schemes.ResidueProperties;
import jalview.structure.StructureMapping;
import jalview.util.Format;
import jalview.schemes.ResidueProperties;
import jalview.structure.StructureMapping;
import jalview.util.Format;
@@
-77,7
+78,7
@@
public class SiftsClient implements SiftsClientI
{
private Entry siftsEntry;
{
private Entry siftsEntry;
- private PDBfile pdb;
+ private StructureFile pdb;
private String pdbId;
private String pdbId;
@@
-147,7
+148,7
@@
public class SiftsClient implements SiftsClientI
* @param pdbId
* @throws SiftsException
*/
* @param pdbId
* @throws SiftsException
*/
- public SiftsClient(PDBfile pdb) throws SiftsException
+ public SiftsClient(StructureFile pdb) throws SiftsException
{
this.pdb = pdb;
this.pdbId = pdb.getId();
{
this.pdb = pdb;
this.pdbId = pdb.getId();